Publications

Alexandra C. Adams, Andras Kufcsak, Katjana Ehrlich, Kevin Dhaliwal, Sohan Seth (2023). Simultaneous Spectral Temporal Modelling for a Time-Resolved Fluorescence Emission Spectrum. IEEE Transactions on Biomedical Engineering.

Rui-Zhi Zhang, Sohan Seth, James Cumby (2023). Grouped representation of interatomic distances as a similarity measure for crystal structures. Digital Discovery.

Nia C. Jenkins, Katjana Ehrlich, Andras Kufcsak, Stephanos Yerolatsitis, Susan Fernandes, Irene Young, Katie Hamilton, Harry A. C. Wood, Tom Quinn, Vikki Young, Ahsan R. Akram, James M. Stone, Robert R. Thomson, Keith Finlayson, Kevin Dhaliwal, Sohan Seth (2023). Computational Fluorescence Suppression in Shifted Excitation Raman Spectroscopy. IEEE Transactions on Biomedical Engineering.

Gary R. Watmough, Magnus Hagdorn, Jodie Brumhead, Sohan Seth, Enrique Delamónica, Charlotte Haddon, William C. Smith (2022). Using open-source data to construct 20 metre resolution maps of children’s travel time to the nearest health facility. Scientific Data.

Jonathan E. Millar, Lucile Neyton, Sohan Seth, Srinivas Murthy, Sean Keating, Maaike Swets, Carole H. Sudre, Timothy D. Spector, Sebastien Ourselin, Claire J. Steves, Jonathan Wolf, ISARIC-4C, Consortium Lead Investigator, J. Kenneth Baillie, Chief Investigator, Malcolm G. Semple, Co-Lead Investigator, Peter J. M. Openshaw, ISARIC Clinical Coordinator, Gail Carson, Co-Investigators, Beatrice Alex, Benjamin Bach, Wendy S. Barclay, Debby Bogaert, Meera Chand, Graham S. Cooke, Annemarie B. Docherty, Jake Dunning, Anna da Silva Filipe, Tom Fletcher, Christopher A. Green, Ewen M. Harrison, Julian A. Hiscox, Antonia YW Ho, Peter W. Horby, Samreen Ijaz, Saye Khoo, Paul Klenerman, Andrew Law, Wei Shen Lim, Alexander J. Mentzer, Laura Merson, Alison M. Meynert, Mahdad Noursadeghi, Shona C. Moore, Massimo Palmarini, William A. Paxton, Georgios Pollakis, Nicholas Price, Andrew Rambaut, David L. Robertson, Clark D. Russell, Vanessa Sancho-Shimizu, Janet T. Scott, Louise Sigfrid, Tom Solomon, Shiranee Sriskandan, David Stuart, Charlotte Summers, Richard S. Tedder, Emma C. Thomson, Ryan S. Thwaites, Lance C. W. Turtle, Maria Zambon, Project Managers, Hayley Hardwick, Chloe Donohue, Jane Ewins, Wilna Oosthuyzen, Fiona Griffiths, Data Analysts, Lisa Norman, Riinu Pius, Tom M. Drake, Cameron J. Fairfield, Stephen Knight, Kenneth A. Mclean, Derek Murphy, Catherine A. Shaw, Data, Information System Manager, Jo Dalton, Michelle Girvan, Egle Saviciute, Stephanie Roberts, Janet Harrison, Laura Marsh, Marie Connor, Data integration, presentation, Gary Leeming, Ross Hendry, Material Management, William Greenhalf, Victoria Shaw, Sarah McDonald, Local Principal Investigators, Kayode Adeniji, Daniel Agranoff, Ken Agwuh, Dhiraj Ail, Ana Alegria, Brian Angus, Abdul Ashish, Dougal Atkinson, Shahedal Bari, Gavin Barlow, Stella Barnass, Nicholas Barrett, Christopher Bassford, David Baxter, Michael Beadsworth, Jolanta Bernatoniene, John Berridge, Nicola Best, Pieter Bothma, David Brealey, Robin Brittain-Long, Naomi Bulteel, Tom Burden, Andrew Burtenshaw, Vikki Caruth, David Chadwick, Duncan Chambler, Nigel Chee, Jenny Child, Srikanth Chukkambotla, Tom Clark, Paul Collini, Graham Cooke, Catherine Cosgrove, Jason Cupitt, Maria-Teresa Cutino-Moguel, Paul Dark, Chris Dawson, Samir Dervisevic, Phil Donnison, Sam Douthwaite, Ingrid DuRand, Ahilanadan Dushianthan, Tristan Dyer, Cariad Evans, Chi Eziefula, Chrisopher Fegan, Adam Finn, Duncan Fullerton, Sanjeev Garg, Atul Garg, Jo Godden, Arthur Goldsmith, Clive Graham, Elaine Hardy, Stuart Hartshorn, Daniel Harvey, Peter Havalda, Daniel B. Hawcutt, Maria Hobrok, Luke Hodgson, Anita Holme, Anil Hormis, Michael Jacobs, Susan Jain, Paul Jennings, Agilan Kaliappan, Vidya Kasipandian, Stephen Kegg, Michael Kelsey, Jason Kendall, Caroline Kerrison, Ian Kerslake, Oliver Koch, Gouri Koduri, George Koshy, Shondipon Laha, Susan Larkin, Tamas Leiner, Patrick Lillie, James Limb, Vanessa Linnett, Jeff Little, Michael MacMahon, Emily MacNaughton, Ravish Mankregod, Huw Masson, Elijah Matovu, Katherine McCullough, Ruth McEwen, Manjula Meda, Gary Mills, Jane Minton, Mariyam Mirfenderesky, Kavya Mohandas, Quen Mok, James Moon, Elinoor Moore, Patrick Morgan, Craig Morris, Katherine Mortimore, Samuel Moses, Mbiye Mpenge, Rohinton Mulla, Michael Murphy, Megan Nagel, Thapas Nagarajan, Mark Nelson, Igor Otahal, Mark Pais, Selva Panchatsharam, Hassan Paraiso, Brij Patel, Justin Pepperell, Mark Peters, Mandeep Phull, Stefania Pintus, Jagtur Singh Pooni, Frank Post, David Price, Rachel Prout, Nikolas Rae, Henrik Reschreiter, Tim Reynolds, Neil Richardson, Mark Roberts, Devender Roberts, Alistair Rose, Guy Rousseau, Brendan Ryan, Taranprit Saluja, Aarti Shah, Prad Shanmuga, Anil Sharma, Anna Shawcross, Jeremy Sizer, Richard Smith, Catherine Snelson, Nick Spittle, Nikki Staines, Tom Stambach, Richard Stewart, Pradeep Subudhi, Tamas Szakmany, Kate Tatham, Jo Thomas, Chris Thompson, Robert Thompson, Ascanio Tridente, Darell Tupper-Carey, Mary Twagira, Andrew Ustianowski, Nick Vallotton, Lisa Vincent-Smith, Shico Visuvanathan, Alan Vuylsteke, Sam Waddy, Rachel Wake, Andrew Walden, Ingeborg Welters, Tony Whitehouse, Paul Whittaker, Ashley Whittington, Meme Wijesinghe, Martin Williams, Lawrence Wilson, Sarah Wilson, Stephen Winchester, Martin Wiselka, Adam Wolverson, Daniel G. Wooton, Andrew Workman, Bryan Yates, Peter Young (2022). Distinct clinical symptom patterns in patients hospitalised with COVID-19 in an analysis of 59,011 patients in the ISARIC-4C study. Scientific Reports.

Isaac Neal, Sohan Seth, Gary Watmough, Mamadou S. Diallo (2022). Census-independent population estimation using representation learning. Scientific Reports.

Olivia V Swann, Nazir I Lone, Ewen M Harrison, Laurie A Tomlinson, Alex J Walker, Michael J Seaborne, Louisa Pollock, James Farrell, Peter S Hall, Sohan Seth, Thomas C Williams, Jennifer Preston, J. Samantha Ainsworth, Freya F Semple, J Kenneth Baillie, Srinivasa V Katikireddi, Ashley Akbari, Ronan Lyons, Colin R Simpson, Malcolm G Semple, Ben Goldacre, Sinead Brophy, Aziz Sheikh, Annemarie B Docherty (2022). Studying the Long-term Impact of COVID-19 in Kids (SLICK). Healthcare use and costs in children and young people following community-acquired SARS-CoV-2 infection: protocol for an observational study using linked primary and secondary routinely collected healthcare data from England, Scotland and Wales. BMJ Open.

Olivia V Swann, Nazir I Lone, Ewen M Harrison, Laurie A Tomlinson, Alex J Walker, Michael J Seaborne, Louisa Pollock, James Farrell, Peter S Hall, Sohan Seth, Thomas C Williams, Jennifer Preston, J. Samantha Ainsworth, Freya F Semple, J Kenneth Baillie, Srinivasa V Katikireddi, Ashley Akbari, Ronan Lyons, Colin R Simpson, Malcolm G Semple, Ben Goldacre, Sinead Brophy, Aziz Sheikh, Annemarie B Docherty (2022). Studying the Long-term Impact of COVID-19 in Kids (SLICK). Healthcare use and costs in children and young people following community-acquired SARS-CoV-2 infection: protocol for an observational study using linked primary and secondary routinely collected healthcare data from England, Scotland and Wales. BMJ Open.

C Turnbull, A Macleod, S Esposito, R Gorantla, S Seth, R Ramamoorthy, F Mehendale (2022). 616 Addressing Challenges to Enable Better Use of Routinely Collected Clinical Photographs: Evaluating the Largest Cleft Dataset for Machine Learning Analysis. British Journal of Surgery.

Ruizhi Zhang, Sohan Seth, James Cumby (2022). Grouped representation of interatomic distances as a similarity measure for crystal structures.

Qihao Jiang, Sohan Seth, Theresa Scharl, Tim Schroeder, Alois Jungbauer, Simone Dimartino (2022). Prediction of the performance of pre‐packed purification columns through machine learning. Journal of Separation Science.

Damien Freitas, Roberto Rizzo, Florian Fusseis, Ian Butler, Sohan Seth, John Wheeler, Oliver Plümper, Hamed Amiri, Alireza Chogani, Christian Schlepütz, Federica Marone, Edward Ando (2022). Influence of pore fluid pressure and differential stress on gypsum dehydration and rock texture revealed by 4D synchrotron X-ray tomography.

Isaac Neal, Sohan Seth, Gary Watmough, Mamadou S. Diallo (2021). Census-Independent Population Estimation using Representation Learning. arXiv:2110.02839 [cs].

Yili Yang, Sohan Seth, Ian B. Butler, Florian Fusseis (2021). Fast Segmentation of 4D Microtomography Volumes from Core-flooding Experiments in Porous Rock using Convolutional Neural Network.

Isaac Neal, Sohan Seth, Gary Watmough, Mamadou Saliou Diallo (2021). Towards Sustainable Census-Independent Population Estimation in Mozambique. Artificial Intelligence for Public Health (AI4PH).

Katerina Boufea, Sohan Seth, Nizar N. Batada (2020). scID Uses Discriminant Analysis to Identify Transcriptionally Equivalent Cell Types across Single-Cell RNA-Seq Data with Batch Effect. iScience.

Sohan Seth, Iain Murray, Christopher K. I. Williams (2019). Model Criticism in Latent Space. Bayesian Analysis.

Alexander Przybylski, Edwin van Beek, Kevin Dhaliwal, Aziz Sheikh, Azin Salimian, Sohan Seth, Giorgos Papanastasiou, Jeremy Walker, Nik Hirani (2019). Stratification of Fibrotic Lung Disease: Integration of Molecular Endotyping and Quantitative CT via Machine Learning. Futuristic Medicine symposium, Royal College of Physicians Edinburgh.

Debaditya Choudhury, Michael G Tanner, Sarah McAughtrie, Fei Yu, Bethany Mills, Tushar R Choudhary, Sohan Seth, Thomas H Craven, James M Stone, Ioulia K Mati, Colin J Campbell, Mark Bradley, Christopher K I Williams, Kevin Dhaliwal, Timothy A Birks, Robert R Thomson (2019). Endoscopic sensing of distal lung physiology. Journal of Physics: Conference Series.

Sohan Seth, Ahsan R. Akram, Kevin Dhaliwal, Christopher K. I. Williams (2018). Estimating Bacterial and Cellular Load in FCFM Imaging. Journal of Imaging.

Debaditya Choudhury, Michael G. Tanner, Sarah McAughtrie, Fei Yu, Bethany Mills, Tushar R. Choudhary, Sohan Seth, Thomas Craven, James M. Stone, Loulia K. Mati, Colin J. Campbell, Mark Bradley, Christopher K. I. Williams, Kevin Dhaliwal, Timothy A. Birks, Robert R. Thomson (2017). Endoscopic sensing of pH in the distal lung (Conference Presentation). Optical Techniques in Pulmonary Medicine II.

Sohan Seth, Ahsan R. Akram, Kevin Dhaliwal, Christopher K. I. Williams (2017). Estimating Bacterial Load in FCFM Imaging. Medical Image Understanding and Analysis.

D. Choudhury, M. G. Tanner, S. McAughtrie, F. Yu, B. Mills, T. R. Choudhary, S. Seth, T. H. Craven, J. M. Stone, I. K. Mati, C. J. Campbell, M. Bradley, C. K. I. Williams, K. Dhaliwal, T. A. Birks, R. R. Thomson (2016). Endoscopic sensing of alveolar pH. Biomedical Optics Express.

Sohan Seth, Ahsan R. Akram, Paul McCool, Jody Westerfeld, David Wilson, Stephen McLaughlin, Kevin Dhaliwal, Christopher K. I. Williams (2016). Assessing the utility of autofluorescence-based pulmonary optical endomicroscopy to predict the malignant potential of solitary pulmonary nodules in humans. Scientific Reports.

Paul Blomstedt, Ritabrata Dutta, Sohan Seth, Alvis Brazma, Samuel Kaski (2016). Modelling-based experiment retrieval: a case study with gene expression clustering. Bioinformatics.

Sohan Seth, Manuel J. A. Eugster (2016). Archetypal Analysis for Nominal Observations. IEEE transactions on pattern analysis and machine intelligence.

Sohan Seth, Manuel J. A. Eugster (2016). Probabilistic archetypal analysis. Machine Learning.

Rosha Pokharel, Sohan Seth, Jose C. Principe (2014). Quantized mixture kernel least mean square. 2014 International Joint Conference on Neural Networks (IJCNN).

Il Memming Park, Sohan Seth, Steven Van Vaerenbergh (2014). Probabilistic kernel least mean squares algorithms. 2014 IEEE International Conference on Acoustics, Speech and Signal Processing (ICASSP).

Sohan Seth, Niko Valimaki, Samuel Kaski, Antti Honkela (2014). Exploration and retrieval of whole-metagenome sequencing samples. Bioinformatics.

Sohan Seth, John Shawe-Taylor, Samuel Kaski (2014). Retrieval of Experiments by Efficient Comparison of Marginal Likelihoods. Neural Information Processing.

Sohan Seth, Jose C. Principe (2014). Learning dependence from samples. International Journal of Bioinformatics Research and Applications.

Sohan Seth, Niko Valimaki, Antti Honkela, Samuel Kaski (2014). Differential analysis of whole-genome shotgun sequences. Machine Learning in Systems Biology.

Rosha Pokharel, Sohan Seth, Jose C. Principe (2013). Mixture kernel least mean square. The 2013 International Joint Conference on Neural Networks (IJCNN).

Il Memming Park, Sohan Seth, Antonio R.C. Paiva, Lin Li, Jose C. Principe (2013). Kernel Methods on Spike Train Space for Neuroscience: A Tutorial. IEEE Signal Processing Magazine.

Lin Li, Il Memming Park, Austin Brockmeier, Badong Chen, Sohan Seth, Joseph T. Francis, Justin C. Sanchez, Jose C. Principe (2013). Adaptive Inverse Control of Neural Spatiotemporal Spike Patterns With a Reproducing Kernel Hilbert Space (RKHS) Framework. IEEE Transactions on Neural Systems and Rehabilitation Engineering.

B. Fadlallah, S. Seth, A. Keil, J. Principe (2012). Quantifying Cognitive State From EEG Using Dependence Measures. IEEE Transactions on Biomedical Engineering.

Il Memming Park, Sohan Seth, Murali Rao, Jose C. Principe (2012). Strictly Positive-Definite Spike Train Kernels for Point-Process Divergences. Neural Computation.

B. H. Fadlallah, A. J. Brockmeier, S. Seth, Lin Li, A. Keil, J. C. Principe (2012). An Association Framework to Analyze Dependence Structure in Time Series. 2012 Annual International Conference of the IEEE Engineering in Medicine and Biology Society.

Sohan Seth, Jose C. Principe (2012). Conditional Association. Neural Computation.

Badong Chen, Songlin Zhao, Sohan Seth, Jose C. Principe (2012). Online efficient learning with quantized KLMS and L1 regularization. The 2012 International Joint Conference on Neural Networks (IJCNN).

Bilal H. Fadlallah, Sohan Seth, Andreas Keil, Jose C. Principe (2012). Analyzing dependence structure of the human brain in response to visual stimuli. 2012 IEEE International Conference on Acoustics, Speech and Signal Processing (ICASSP).

Lin Li, Il Memming Park, Sohan Seth, Justin C. Sanchez, Jose C. Principe (2012). Functional Connectivity Dynamics Among Cortical Neurons: A Dependence Analysis. IEEE Transactions on Neural Systems and Rehabilitation Engineering.

S. Seth, J. C. Principe (2012). Assessing Granger Non-Causality Using Nonparametric Measure of Conditional Independence. IEEE Transactions on Neural Networks and Learning Systems.

Lin Li, Il Memming Park, Sohan Seth, John S. Choi, Joseph T. Francis, Justin C. Sanchez, Jose C. Principe (2011). An adaptive decoder from spike trains to micro-stimulation using kernel least-mean-squares (KLMS). 2011 IEEE International Workshop on Machine Learning for Signal Processing.

B. H. Fadlallah, S. Seth, A. Keil, J. C. Principe (2011). Robust EEG preprocessing for dependence-based condition discrimination. 2011 Annual International Conference of the IEEE Engineering in Medicine and Biology Society.

Sohan Seth, Murali Rao, Il Park, Jose C. Principe (2011). A Unified Framework for Quadratic Measures of Independence. IEEE Transactions on Signal Processing.

Sohan Seth, Austin J. Brockmeier, John S. Choi, Mulugeta Semework, Joseph T. Francis, Jose C. Principe (2011). Evaluating dependence in spike train metric spaces. The 2011 International Joint Conference on Neural Networks.

Il Park, Sohan Seth, Murali Rao, Jose C. Principe (2011). Estimation of symmetric chi-square divergence for point processes. 2011 IEEE International Conference on Acoustics, Speech and Signal Processing (ICASSP).

Sohan Seth, Austin J. Brockmeier, Jose C. Principe (2011). A metric approach toward point process divergence. 2011 IEEE International Conference on Acoustics, Speech and Signal Processing (ICASSP).

Murali Rao, Sohan Seth, Jianwu Xu, Yunmei Chen, Hemant Tagare, Jose C. Principe (2011). A test of independence based on a generalized correlation function. Signal Processing.

Sohan Seth, Jose C. Principe (2010). Variable Selection: A Statistical Dependence Perspective. 2010 Ninth International Conference on Machine Learning and Applications.

Lin Li, Il Park, S Seth, J C Sanchez, J C Principe (2010). Neuronal functional connectivity dynamics in cortex: An MSC-based analysis. 2010 Annual International Conference of the IEEE Engineering in Medicine and Biology.

Sohan Seth, Jose C. Principe (2010). A Test of Granger Non-causality Based on Nonparametric Conditional Independence. 2010 20th International Conference on Pattern Recognition.

Sohan Seth, Jose C. Principe (2010). A conditional independence perspective of variable selection. 2010 IEEE International Workshop on Machine Learning for Signal Processing.

Sohan Seth, Jose C. Principe (2010). A conditional distribution function based approach to design nonparametric tests of independence and conditional independence. 2010 IEEE International Conference on Acoustics, Speech and Signal Processing.

Weifeng Liu, Puskal Pokharel, Jianwu Xu, Sohan Seth (2010). Correntropy for Random Variables: Properties and Applications in Statistical Inference. Information Theoretic Learning.

JungPhil Kwon, S. Seth, A. Keil, J.C. Principe (2009). Estimation of instantaneous power in the EEG to assess brain connectivity with high temporal resolution. 2009 Annual International Conference of the IEEE Engineering in Medicine and Biology Society.

Sohan Seth, Jose C. Principe (2009). Estimation of density ratio and its application to design a measure of dependence. 2009 IEEE International Workshop on Machine Learning for Signal Processing.

Lin Li, S. Seth, Il Park, J.C. Sanchez, J.C. Principe (2009). Estimation and visualization of neuronal functional connectivity in motor tasks. 2009 Annual International Conference of the IEEE Engineering in Medicine and Biology Society.

Sohan Seth, Jose C. Principe (2009). On speeding up computation in information theoretic learning. 2009 International Joint Conference on Neural Networks.

Sohan Seth, Il Park, Jose C. Principe (2009). A new nonparametric measure of conditional independence. 2009 IEEE International Conference on Acoustics, Speech and Signal Processing.

Sohan Seth, Jose C. Principe (2008). Compressed signal reconstruction using the correntropy induced metric. 2008 IEEE International Conference on Acoustics, Speech and Signal Processing.

Sohan Seth, Mustafa C. Ozturk, Jose C. Principe (2007). Signal Processing with Echo State Networks in the Complex Domain. 2007 IEEE Workshop on Machine Learning for Signal Processing.

Nabarun Bhattacharyya, Sohan Seth, Bipan Tudu, Pradip Tamuly, Arun Jana, Devdulal Ghosh, Rajib Bandyopadhyay, Manabendra Bhuyan (2007). Monitoring of black tea fermentation process using electronic nose. Journal of Food Engineering.

Nabarun Bhattacharyya, Sohan Seth, Bipan Tudu, Pradip Tamuly, Arun Jana, Devdulal Ghosh, Rajib Bandyopadhyay, Manabendra Bhuyan, Santanu Sabhapandit (2007). Detection of optimum fermentation time for black tea manufacturing using electronic nose. Sensors and Actuators B: Chemical.